LOC103696513 protein (Phoenix dactylifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103696513

Nuclear transcription factor Y subunit C-4-like. (230 aa)

Predicted Functional Partners:

LOC103717764

0.784

LOC103721203

0.780

LOC103702864

0.740

LOC103708890

0.739

LOC103718134

0.739

LOC103705784

0.684

LOC103708639

0.684

LOC103704218

0.679

LOC103698106

0.678

LOC103707564

0.678

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103696513	LOC103698106	A0A3Q0HPU2	A0A2H3X4U0	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit B-3-like.	0.678
LOC103696513	LOC103702864	A0A3Q0HPU2	A0A2H3XH12	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit B-like isoform X1.	0.740
LOC103696513	LOC103704218	A0A3Q0HPU2	A0A2H3XLT0	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit B-3-like.	0.679
LOC103696513	LOC103705784	A0A3Q0HPU2	A0A2H3XRW4	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit A-6-like.	0.684
LOC103696513	LOC103707564	A0A3Q0HPU2	A0A2H3XY71	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit B-3-like.	0.678
LOC103696513	LOC103708639	A0A3Q0HPU2	A0A3Q0I6J4	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit A-3-like.	0.684
LOC103696513	LOC103708890	A0A3Q0HPU2	A0A2H3Y216	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit B-like.	0.739
LOC103696513	LOC103717764	A0A3Q0HPU2	A0A2H3YVG8	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit B-1-like.	0.784
LOC103696513	LOC103718134	A0A3Q0HPU2	A0A2H3YWV9	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit B-like isoform X1.	0.739
LOC103696513	LOC103721203	A0A3Q0HPU2	A0A2H3Z7A0	Nuclear transcription factor Y subunit C-4-like.	Nuclear transcription factor Y subunit B-1-like.	0.780
LOC103698106	LOC103696513	A0A2H3X4U0	A0A3Q0HPU2	Nuclear transcription factor Y subunit B-3-like.	Nuclear transcription factor Y subunit C-4-like.	0.678
LOC103698106	LOC103705784	A0A2H3X4U0	A0A2H3XRW4	Nuclear transcription factor Y subunit B-3-like.	Nuclear transcription factor Y subunit A-6-like.	0.541
LOC103698106	LOC103708639	A0A2H3X4U0	A0A3Q0I6J4	Nuclear transcription factor Y subunit B-3-like.	Nuclear transcription factor Y subunit A-3-like.	0.541
LOC103702864	LOC103696513	A0A2H3XH12	A0A3Q0HPU2	Nuclear transcription factor Y subunit B-like isoform X1.	Nuclear transcription factor Y subunit C-4-like.	0.740
LOC103702864	LOC103705784	A0A2H3XH12	A0A2H3XRW4	Nuclear transcription factor Y subunit B-like isoform X1.	Nuclear transcription factor Y subunit A-6-like.	0.800
LOC103702864	LOC103708639	A0A2H3XH12	A0A3Q0I6J4	Nuclear transcription factor Y subunit B-like isoform X1.	Nuclear transcription factor Y subunit A-3-like.	0.800
LOC103704218	LOC103696513	A0A2H3XLT0	A0A3Q0HPU2	Nuclear transcription factor Y subunit B-3-like.	Nuclear transcription factor Y subunit C-4-like.	0.679
LOC103704218	LOC103705784	A0A2H3XLT0	A0A2H3XRW4	Nuclear transcription factor Y subunit B-3-like.	Nuclear transcription factor Y subunit A-6-like.	0.541
LOC103704218	LOC103708639	A0A2H3XLT0	A0A3Q0I6J4	Nuclear transcription factor Y subunit B-3-like.	Nuclear transcription factor Y subunit A-3-like.	0.541
LOC103705784	LOC103696513	A0A2H3XRW4	A0A3Q0HPU2	Nuclear transcription factor Y subunit A-6-like.	Nuclear transcription factor Y subunit C-4-like.	0.684