STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113460993Probable xyloglucan endotransglucosylase/hydrolase protein 5. (141 aa)    
Predicted Functional Partners:
LOC103703387
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.672
LOC103717757
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.672
LOC103705179
Vacuolar protein sorting-associated protein 26B isoform X1.
    
 
 0.668
LOC103711668
Vacuolar protein sorting-associated protein 26B-like isoform X1.
    
 
 0.668
LOC103714634
Uncharacterized protein LOC103714634 isoform X1.
   
 
 0.611
LOC103720101
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.611
LOC103724131
Misshapen-like kinase 1.
   
 
 0.611
LOC103722490
LOW QUALITY PROTEIN: photosystem II stability/assembly factor HCF136, chloroplastic-like.
    
 0.594
LOC103721991
AP3-complex subunit beta-A isoform X1.
    
 0.448
LOC103715902
AP3-complex subunit beta-A-like.
    
 0.448
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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