STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103698671E3 ubiquitin-protein ligase UPL6-like isoform X1. (197 aa)    
Predicted Functional Partners:
LOC103697813
E3 ubiquitin-protein ligase UPL6-like isoform X1.
 
      0.899
LOC103702862
E3 ubiquitin-protein ligase UPL4-like.
   
 
 0.760
LOC103718136
E3 ubiquitin-protein ligase UPL4-like isoform X1.
   
 
 0.760
LOC103714627
E3 ubiquitin-protein ligase UPL3-like.
   
 
 0.759
LOC103706183
E3 ubiquitin-protein ligase UPL3-like.
   
 
 0.759
LOC103698917
E3 ubiquitin-protein ligase UPL6-like.
 
      0.727
LOC103721993
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.646
LOC103703591
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.646
LOC103712331
NEDD8-activating enzyme E1 catalytic subunit.
   
 
 0.580
LOC103702083
E3 ubiquitin-protein ligase listerin.
   
 0.564
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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