STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113462467Sister chromatid cohesion protein PDS5 homolog B-B-like. (471 aa)    
Predicted Functional Partners:
LOC103721104
Structural maintenance of chromosomes protein.
   
 0.970
LOC103714315
Protein CHROMOSOME TRANSMISSION FIDELITY 7.
   
 0.939
LOC103698433
Uncharacterized protein LOC103698433.
   
 0.934
LOC103721114
Uncharacterized protein LOC103721114.
   
 0.934
LOC103713723
Protein GRAVITROPIC IN THE LIGHT 1-like.
   
 0.922
LOC103718274
Structural maintenance of chromosomes protein.
   
 0.922
LOC103704180
Protein GRAVITROPIC IN THE LIGHT 1-like.
   
 0.922
LOC103706013
Sister chromatid cohesion 1 protein 4-like.
   
 0.848
LOC103707258
Sister chromatid cohesion 1 protein 3-like.
   
 0.848
LOC103710385
Sister chromatid cohesion 1 protein 1.
   
 0.848
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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