STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103709969Beta-amylase. (468 aa)    
Predicted Functional Partners:
LOC103697882
Probable alpha-glucosidase Os06g0675700; Belongs to the glycosyl hydrolase 31 family.
     
 0.901
LOC103711711
4-alpha-glucanotransferase DPE2.
     
 0.786
LOC103722583
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
     
 0.782
LOC103721718
4-alpha-glucanotransferase.
     
 0.781
LOC103708694
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
     
 0.731
LOC103720069
Uncharacterized protein LOC103720069.
     
 0.721
LOC103720447
Alpha-amylase 3, chloroplastic isoform X1.
     
 0.721
LOC103713862
Isoamylase 2, chloroplastic.
     
 0.690
LOC103704066
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
     
 0.677
LOC103700795
1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X1.
     
 0.672
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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