STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103709350Polygalacturonase At1g48100. (395 aa)    
Predicted Functional Partners:
LOC103700363
Probable polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
     0.513
LOC103712614
Cellulose synthase-like protein D5; Belongs to the glycosyltransferase 2 family.
      
 0.513
LOC103711378
Exopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
     0.492
LOC103721084
Polygalacturonase QRT3-like.
      
 0.431
LOC103706959
LOW QUALITY PROTEIN: 60S ribosomal protein L21-2-like.
   
   0.424
LOC103711864
60S ribosomal protein L21-1.
   
   0.424
LOC103701411
BURP domain-containing protein 3-like.
    
 0.419
LOC103723389
Serine--glyoxylate aminotransferase isoform X1.
      
 0.418
LOC103709246
Beta-glucosidase 6 isoform X1; Belongs to the glycosyl hydrolase 1 family.
      
 0.412
LOC103722557
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
      
 0.410
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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