STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103713828LOW QUALITY PROTEIN: F-box/WD-40 repeat-containing protein At5g21040. (565 aa)    
Predicted Functional Partners:
LOC103701991
RING-box protein 1a-like.
    
 0.935
LOC103711519
RING-box protein 1a.
    
 0.935
LOC103697899
ubiquitin-60S ribosomal protein L40.
    
  0.874
LOC103704039
Cell division control protein; Belongs to the CDC6/cdc18 family.
    
 0.802
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
    
 0.794
rpl2-2
50S ribosomal protein L2.
    
 0.794
rpl2-3
Ribosomal protein L2.
    
 0.794
LOC103707291
Cullin-1-like; Belongs to the cullin family.
    
 0.785
LOC103716049
Cullin-1; Belongs to the cullin family.
    
 0.785
LOC103716058
Cullin-1-like; Belongs to the cullin family.
    
 0.785
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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