STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103713274DNA cross-link repair protein SNM1 isoform X1. (558 aa)    
Predicted Functional Partners:
LOC103695637
Zinc finger CCCH domain-containing protein 45-like isoform X2.
    
 0.987
LOC103713836
Zinc finger CCCH domain-containing protein 45-like.
    
 0.987
LOC103708242
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
    
 0.897
LOC103704542
ATP-dependent DNA helicase 2 subunit KU70 isoform X1.
   
 0.885
LOC103710110
Protein SIEL isoform X1.
   
 0.877
LOC103704490
Cleavage stimulation factor subunit 50 isoform X1.
   
 0.820
LOC103709595
Symplekin isoform X1.
   
 0.815
LOC103713953
Uncharacterized protein LOC103713953 isoform X1.
   
 0.815
LOC103714943
Integrator complex subunit 3.
    
 0.811
LOC103701483
DNA ligase.
   
 0.790
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.