STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103720780Cytochrome c biogenesis protein CCS1, chloroplastic isoform X1. (592 aa)    
Predicted Functional Partners:
ccsA
Cytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
 
  
 0.983
LOC103719221
Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 isoform X2.
  
  
 0.800
atpA
ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
  
  
 0.727
atp1
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
  
 0.727
LOC103714815
Peroxiredoxin Q, chloroplastic-like.
  
  
 0.675
LOC103716954
Peroxiredoxin Q, chloroplastic-like.
  
  
 0.675
atpI
ATP synthase subunit a, chloroplastic; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
  
  
 0.638
atp6
ATP synthase subunit a.
  
  
 0.638
LOC103709172
Thioredoxin-like protein HCF164, chloroplastic.
  
  
 0.637
LOC103712399
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic.
   
  
 0.630
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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