STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113463784Putative rRNA methyltransferase. (161 aa)    
Predicted Functional Partners:
LOC103721398
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.975
LOC103702450
Probable rRNA-processing protein EBP2 homolog.
   
 
 0.966
LOC103719683
Uncharacterized protein LOC103719683.
   
 
 0.966
LOC103715924
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.961
LOC103699750
Probable ribosome biogenesis protein RLP24.
   
 
 0.957
LOC103720208
RNA helicase.
   
 0.953
LOC103711731
Probable nucleolar protein 5-2 isoform X2.
   
 0.947
LOC103713994
Probable nucleolar protein 5-2.
   
 0.947
LOC103715292
Uncharacterized protein LOC103715292.
   
 
 0.946
LOC103703184
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.941
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.