STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl16-250S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (136 aa)    
Predicted Functional Partners:
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
 
 0.987
rpl2-2
50S ribosomal protein L2.
 
 0.987
rpl14
50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA.
 0.983
rps8
30S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.
 
 
 0.972
rpl2-3
Ribosomal protein L2.
  
 0.972
rpl22
50S ribosomal protein L22, chloroplastic; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome; Belongs to the universal ribosomal protein uL22 family.
  
 0.971
LOC103707530
50S ribosomal protein L5, chloroplastic.
 
 0.968
rps3
30S ribosomal protein S3, chloroplastic; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.965
LOC103716674
50S ribosomal protein L6, chloroplastic; Belongs to the universal ribosomal protein uL6 family.
  
 0.964
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 
 0.964
Your Current Organism:
Phoenix dactylifera
NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm
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