STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN79967.1Type IV pilus assembly protein PilE. (153 aa)    
Predicted Functional Partners:
SEN80004.1
Type IV pilus assembly protein PilY1.
 
  
 0.965
SEN80128.1
Type IV pilus assembly protein PilV.
 
  
 0.962
SEN80090.1
Type IV pilus assembly protein PilW.
 
  
 0.956
SEN80054.1
Type IV pilus assembly protein PilX.
 
  
 0.933
SEN80169.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.927
SEO28125.1
Type IV pilus assembly protein PilN.
 
  
 0.805
SEO28162.1
Type IV pilus assembly protein PilO.
 
   
 0.779
SEO28222.1
Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.
 
   
 0.778
SEO28094.1
Type IV pilus assembly protein PilM.
 
   
 0.774
SEO28194.1
Type IV pilus assembly protein PilP.
  
  
 0.758
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.