SEN88109.1 protein (Nitrosomonas oligotropha)

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Score

SEN88109.1

Heat shock protein Hsp15. (134 aa)

Predicted Functional Partners:

rplS

0.966

rplQ

0.953

rpmB

0.953

rplN

0.950

rplM

0.949

rplV

0.949

rpmF

0.948

rplC

0.948

rplD

0.948

rplW

0.948

Your Current Organism:

Nitrosomonas oligotropha

NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEN88109.1	rplC	SAMN05216333_10211	SAMN05216333_10753	Heat shock protein Hsp15.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.948
SEN88109.1	rplD	SAMN05216333_10211	SAMN05216333_10754	Heat shock protein Hsp15.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.948
SEN88109.1	rplM	SAMN05216333_10211	SAMN05216333_10679	Heat shock protein Hsp15.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.949
SEN88109.1	rplN	SAMN05216333_10211	SAMN05216333_10763	Heat shock protein Hsp15.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.950
SEN88109.1	rplQ	SAMN05216333_10211	SAMN05216333_10780	Heat shock protein Hsp15.	LSU ribosomal protein L17P.	0.953
SEN88109.1	rplS	SAMN05216333_10211	SAMN05216333_10377	Heat shock protein Hsp15.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.966
SEN88109.1	rplV	SAMN05216333_10211	SAMN05216333_10758	Heat shock protein Hsp15.	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.949
SEN88109.1	rplW	SAMN05216333_10211	SAMN05216333_10755	Heat shock protein Hsp15.	LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.948
SEN88109.1	rpmB	SAMN05216333_10211	SAMN05216333_12125	Heat shock protein Hsp15.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.953
SEN88109.1	rpmF	SAMN05216333_10211	SAMN05216333_104122	Heat shock protein Hsp15.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.948
rplC	SEN88109.1	SAMN05216333_10753	SAMN05216333_10211	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Heat shock protein Hsp15.	0.948
rplC	rplD	SAMN05216333_10753	SAMN05216333_10754	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN05216333_10753	SAMN05216333_10679	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplN	SAMN05216333_10753	SAMN05216333_10763	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplC	rplQ	SAMN05216333_10753	SAMN05216333_10780	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L17P.	0.999
rplC	rplS	SAMN05216333_10753	SAMN05216333_10377	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplC	rplV	SAMN05216333_10753	SAMN05216333_10758	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplC	rplW	SAMN05216333_10753	SAMN05216333_10755	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rpmB	SAMN05216333_10753	SAMN05216333_12125	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.996
rplC	rpmF	SAMN05216333_10753	SAMN05216333_104122	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.995