STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN93548.1Pyrroloquinoline-quinone synthase. (247 aa)    
Predicted Functional Partners:
SEO13960.1
Unsaturated chondroitin disaccharide hydrolase.
 
     0.695
SEO00575.1
O-antigen ligase.
  
     0.645
SEP09395.1
Putative copper resistance protein D.
  
     0.641
SEO09507.1
Outer membrane protein (porin).
  
    0.627
SEO65286.1
Hypothetical protein.
  
     0.614
SEO16872.1
Hypothetical protein.
  
     0.608
SEO79734.1
Putative copper resistance protein D.
  
     0.581
SEN74647.1
DNA-binding beta-propeller fold protein YncE.
 
     0.572
metE
Methionine synthase (B12-independent); Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
       0.572
ubiC
Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.
  
   
 0.519
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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