STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN94161.1Protein of unknown function. (123 aa)    
Predicted Functional Partners:
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.813
SEN94196.1
Signal peptidase I Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family.
  
    0.775
SEO28125.1
Type IV pilus assembly protein PilN.
  
   
 0.749
SEO35462.1
LysM domain-containing protein.
  
     0.730
SEO71761.1
Pilus assembly protein FimV.
  
     0.729
SEO28094.1
Type IV pilus assembly protein PilM.
 
   
 0.717
SEO28162.1
Type IV pilus assembly protein PilO.
  
   
 0.715
SEO28194.1
Type IV pilus assembly protein PilP.
  
   
 0.713
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.688
SEO33860.1
CheW protein.
  
     0.685
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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