STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN89964.1AhpC/TSA family protein. (218 aa)    
Predicted Functional Partners:
SEO14614.1
Phosphate-selective porin OprO and OprP.
  
     0.629
SEO25772.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.575
SEO42588.1
Polysaccharide export outer membrane protein.
  
     0.529
SEO83941.1
Protein of unknown function.
  
     0.520
SEO52161.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.515
SEO81732.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.515
SEN90000.1
Predicted RNA-binding protein, contains PUA-like domain.
       0.509
SEO02948.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.480
SEO45969.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.472
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.465
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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