STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN98966.1fatty-acyl-CoA synthase. (607 aa)    
Predicted Functional Partners:
SEO76156.1
Acyl transferase domain-containing protein.
 0.999
SEO47435.1
Acyl transferase domain-containing protein.
 0.990
SEO47352.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
0.989
SEN99001.1
Nucleoside-diphosphate-sugar epimerase.
 
  0.986
SEN99056.1
Serine palmitoyltransferase.
 
  0.984
SEO47389.1
Amino acid adenylation domain-containing protein.
 0.981
SEN99028.1
Acyl carrier protein.
 
  0.973
SEO76131.1
8-amino-7-oxononanoate synthase.
 
 0.973
SEN95984.1
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
    
 
 0.931
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.921
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.