STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO07904.1Hypothetical protein. (383 aa)    
Predicted Functional Partners:
SEO07866.1
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
     0.961
SEO07802.1
Lipopolysaccharide export system permease protein.
 
     0.895
SEO07778.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.890
SEO07745.1
Diacylglycerol kinase catalytic domain-containing protein.
 
     0.880
SEO07713.1
Hypothetical protein.
 
     0.877
SEO07838.1
Lipopolysaccharide export system permease protein.
 
     0.818
SEN99028.1
Acyl carrier protein.
 
     0.789
SEN73618.1
Diadenosine tetraphosphate (Ap4A) hydrolase.
 
     0.783
SEN99001.1
Nucleoside-diphosphate-sugar epimerase.
  
     0.774
SEN98966.1
fatty-acyl-CoA synthase.
  
     0.772
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.