STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO09412.1L,D-transpeptidase catalytic domain. (168 aa)    
Predicted Functional Partners:
SEO09478.1
L,D-transpeptidase ErfK/SrfK.
 
  
 0.751
SEO74056.1
L,D-transpeptidase ErfK/SrfK.
 
  
 0.745
SEN98688.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.581
SEO09300.1
Hydrogenase maturation protein, carbamoyl dehydratase HypE.
       0.545
SEO09338.1
Hydrogenase expression/formation protein HypD; Belongs to the HypD family.
       0.545
SEO09377.1
Hydrogenase expression/formation protein HypC.
       0.545
SEO09239.1
Putative two-component system protein, hydrogenase maturation factor HypX/HoxX.
       0.525
SEO09448.1
Murein lipoprotein.
  
    0.517
SEO16835.1
Competence protein ComEC.
     
 0.475
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.