STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO13863.1Pimeloyl-ACP methyl ester carboxylesterase. (296 aa)    
Predicted Functional Partners:
SEO76156.1
Acyl transferase domain-containing protein.
  
 0.988
SEO76131.1
8-amino-7-oxononanoate synthase.
  
 0.971
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.907
SEO38737.1
Cobalt-zinc-cadmium efflux system protein.
 
      0.899
SEO47472.1
Amino acid adenylation domain-containing protein.
   
 0.837
SEO50603.1
acyl-CoA dehydrogenase.
   
 0.802
SEO26659.1
Chorismate mutase.
     
 0.619
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
   
  0.612
SEO23176.1
Urea carboxylase.
   
 
 0.610
SEO47435.1
Acyl transferase domain-containing protein.
  
 0.594
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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