STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO14015.1Imidazolonepropionase. (510 aa)    
Predicted Functional Partners:
SEN82004.1
Agmatinase; Belongs to the arginase family.
  
 
 0.783
mtaD
5-methylthioadenosine/S-adenosylhomocysteine deaminase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.
    
 0.605
SEO81732.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.533
SEO52161.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.527
SEO02948.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.492
SEO13987.1
PEP-CTERM protein-sorting domain-containing protein.
       0.490
SEO45969.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
  
     0.489
SEO91035.1
Iron complex outermembrane recepter protein.
  
     0.479
SEO57011.1
BNR repeat-like domain-containing protein.
  
     0.472
SEO83745.1
Spermidine synthase.
 
  
  0.469
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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