STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO29057.1Nucleotide-binding universal stress protein, UspA family. (141 aa)    
Predicted Functional Partners:
SEO29022.1
Integral membrane protein, YjbE family.
 
     0.816
SEO29092.1
Beta-lactamase superfamily domain-containing protein.
       0.688
SEO29127.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
     
 0.677
SEO28990.1
NTE family protein.
       0.654
SEO89537.1
Nucleotide-binding universal stress protein, UspA family.
  
     0.640
SEO28956.1
Hypothetical protein.
       0.623
SEO45862.1
Universal stress protein A.
  
     0.569
SEO28926.1
Prolyl aminopeptidase Serine peptidase. MEROPS family S33; Belongs to the peptidase S33 family.
    
  0.526
SEP02510.1
PAS domain S-box-containing protein.
  
 
 0.487
SEO92685.1
Ribosomal subunit interface protein.
   
  
 0.410
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.