STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO38151.1Conjugative transfer signal peptidase TraF. (184 aa)    
Predicted Functional Partners:
SEO38115.1
Type IV secretion system protein VirD4.
 
     0.939
SEO38204.1
Antirestriction protein ArdC.
 
     0.934
SEP15125.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.796
SEO39371.1
Type IV secretion system protein VirB10.
 
   
 0.780
SEO39438.1
Type IV secretion system protein VirB9.
 
     0.780
SEO39452.1
Type IV secretion system protein VirB5.
 
     0.780
SEO39470.1
Type IV secretion system protein VirB4.
 
   
 0.780
SEO86454.1
Type IV secretion system protein VirB4.
 
   
 0.780
SEO86482.1
Type IV secretion system protein VirB5.
 
     0.780
SEO86525.1
Type IV secretion system protein VirB9.
 
     0.780
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.