STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO61547.1Phosphate-selective porin O and P. (477 aa)    
Predicted Functional Partners:
SEN95299.1
WD40-like Beta Propeller Repeat.
    
 
 0.964
SEO61521.1
Hypothetical protein.
 
    0.962
SEO61580.1
Sensory domain of two-component sensor kinase.
 
 
   0.946
SEO61485.1
N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated.
 
     0.939
SEO57204.1
Phospholipid-binding lipoprotein MlaA.
  
 
 
 0.843
SEO01214.1
Phospholipid-binding lipoprotein MlaA.
  
 
 
 0.840
SEO61618.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
   0.767
SEP14899.1
Aerobic hydroxylamine oxidoreductase precursor.
  
     0.704
SEO69699.1
Short chain amide porin.
  
   0.652
SEO00673.1
Protein of unknown function.
  
     0.566
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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