STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO60109.1Putative zinc-finger. (237 aa)    
Predicted Functional Partners:
SEO60146.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.952
rpoE
RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.792
SEO34150.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.792
SEO44614.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.792
SEO47615.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.792
SEO90984.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.792
SEO60070.1
Subtilase family protein.
       0.791
SEO25418.1
Protein kinase domain-containing protein.
    
 
 0.638
SEO60196.1
Conserved hypothetical protein.
       0.564
SEO59968.1
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
       0.427
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.