STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO85707.1Helix-turn-helix. (107 aa)    
Predicted Functional Partners:
SEO85735.1
Serine/threonine-protein kinase HipA.
 
   0.972
SEO85769.1
Hypothetical protein.
       0.741
SEO85683.1
RadC-like JAB domain-containing protein.
       0.596
SEN99558.1
Serine/threonine-protein kinase HipA.
 
   0.590
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
    
  0.564
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.554
SEO85633.1
Hypothetical protein.
       0.550
SEO85659.1
Antirestriction protein ArdC.
       0.550
SEO25382.1
Tetratricopeptide repeat-containing protein.
    
 0.512
SEO85610.1
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C.
       0.495
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.