STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO90034.1Von Willebrand factor type A domain-containing protein. (775 aa)    
Predicted Functional Partners:
SEO90062.1
Nitric oxide reductase NorQ protein.
 
  
 0.970
SEO90094.1
Ribulose 1,5-bisphosphate carboxylase small subunit.
 
   
 0.880
SEP04732.1
Nitric oxide reductase NorQ protein.
 
  
 0.850
SEO71122.1
Hypothetical protein.
 
     0.804
cbbL-2
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.766
SEP04704.1
Nitric oxide reductase, NorB subunit apoprotein.
  
  
 0.703
SEP04676.1
Nitric oxide reductase, NorC subunit apoprotein.
  
    0.700
SEO90008.1
Hypothetical protein.
       0.505
SEO90142.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.451
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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