STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO91035.1Iron complex outermembrane recepter protein. (832 aa)    
Predicted Functional Partners:
SEO91014.1
FecR family protein.
 
  
 0.864
SEO90984.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.775
SEO91051.1
Uncharacterized iron-regulated membrane protein.
 
     0.771
SEO21657.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.733
SEO93831.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.693
SEP11567.1
Protein TonB.
  
 
 0.693
SEO47615.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.652
SEO32037.1
Cell division and transport-associated protein TolA.
   
   0.552
SEO47270.1
Putative ATP-binding cassette transporter.
 
    0.535
SEO42588.1
Polysaccharide export outer membrane protein.
  
     0.529
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.