STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO99303.1Putative Zn-dependent protease, contains TPR repeats. (541 aa)    
Predicted Functional Partners:
SEO03594.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
 
   0.713
ribB
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.643
SEO99334.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.640
SEO99354.1
Putative ABC transport system ATP-binding protein.
       0.591
SEO64994.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
    
  0.574
SEO20428.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.571
SEO99379.1
Putative ABC transport system permease protein.
       0.561
SEO99280.1
Hypothetical protein.
       0.540
SEO97444.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.446
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.441
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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