SEP00777.1 protein (Nitrosomonas oligotropha)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEP00777.1

AAA domain-containing protein. (1552 aa)

Predicted Functional Partners:

metG

0.687

SEP00834.1

0.621

SEP00889.1

0.606

SEP00805.1

0.583

SEP00866.1

0.578

SEO85853.1

0.497

SEN99526.1

0.488

SEP03949.1

0.480

SEP00752.1

0.469

SEP12061.1

0.440

Your Current Organism:

Nitrosomonas oligotropha

NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEN99526.1	SEP00777.1	SAMN05216333_10340	SAMN05216333_1333	Transcriptional regulator, y4mF family.	AAA domain-containing protein.	0.488
SEO85853.1	SEP00777.1	SAMN05216333_12211	SAMN05216333_1333	Hypothetical protein.	AAA domain-containing protein.	0.497
SEP00752.1	SEP00777.1	SAMN05216333_1332	SAMN05216333_1333	DNA polymerase V; Belongs to the peptidase S24 family.	AAA domain-containing protein.	0.469
SEP00777.1	SEN99526.1	SAMN05216333_1333	SAMN05216333_10340	AAA domain-containing protein.	Transcriptional regulator, y4mF family.	0.488
SEP00777.1	SEO85853.1	SAMN05216333_1333	SAMN05216333_12211	AAA domain-containing protein.	Hypothetical protein.	0.497
SEP00777.1	SEP00752.1	SAMN05216333_1333	SAMN05216333_1332	AAA domain-containing protein.	DNA polymerase V; Belongs to the peptidase S24 family.	0.469
SEP00777.1	SEP00805.1	SAMN05216333_1333	SAMN05216333_1334	AAA domain-containing protein.	Type I restriction enzyme, R subunit.	0.583
SEP00777.1	SEP00834.1	SAMN05216333_1333	SAMN05216333_1335	AAA domain-containing protein.	Protein of unknown function.	0.621
SEP00777.1	SEP00866.1	SAMN05216333_1333	SAMN05216333_1336	AAA domain-containing protein.	Type I restriction enzyme, S subunit.	0.578
SEP00777.1	SEP00889.1	SAMN05216333_1333	SAMN05216333_1337	AAA domain-containing protein.	Type I restriction enzyme M protein.	0.606
SEP00777.1	SEP03949.1	SAMN05216333_1333	SAMN05216333_13718	AAA domain-containing protein.	Type I restriction enzyme, R subunit.	0.480
SEP00777.1	SEP12061.1	SAMN05216333_1333	SAMN05216333_1492	AAA domain-containing protein.	Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.	0.440
SEP00777.1	metG	SAMN05216333_1333	SAMN05216333_10245	AAA domain-containing protein.	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.687
SEP00805.1	SEP00777.1	SAMN05216333_1334	SAMN05216333_1333	Type I restriction enzyme, R subunit.	AAA domain-containing protein.	0.583
SEP00805.1	SEP00834.1	SAMN05216333_1334	SAMN05216333_1335	Type I restriction enzyme, R subunit.	Protein of unknown function.	0.772
SEP00805.1	SEP00866.1	SAMN05216333_1334	SAMN05216333_1336	Type I restriction enzyme, R subunit.	Type I restriction enzyme, S subunit.	0.959
SEP00805.1	SEP00889.1	SAMN05216333_1334	SAMN05216333_1337	Type I restriction enzyme, R subunit.	Type I restriction enzyme M protein.	0.965
SEP00834.1	SEP00777.1	SAMN05216333_1335	SAMN05216333_1333	Protein of unknown function.	AAA domain-containing protein.	0.621
SEP00834.1	SEP00805.1	SAMN05216333_1335	SAMN05216333_1334	Protein of unknown function.	Type I restriction enzyme, R subunit.	0.772
SEP00834.1	SEP00866.1	SAMN05216333_1335	SAMN05216333_1336	Protein of unknown function.	Type I restriction enzyme, S subunit.	0.722