STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP13631.1Na+-driven multidrug efflux pump. (514 aa)    
Predicted Functional Partners:
SEP11208.1
GDP-mannose 6-dehydrogenase.
  
  
 0.964
SEO01758.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.963
SEO22883.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.960
SEO22916.1
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.957
SEP16360.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.929
SEO97911.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
  
 0.920
SEO34820.1
Predicted hydrolase, HAD superfamily.
  
 
 0.850
SEP13649.1
Hypothetical protein.
       0.777
SEO34784.1
Glycosyltransferase, GT2 family.
  
 
 0.773
SEO42509.1
Tyrosine-protein kinase Etk/Wzc.
 
  
 0.753
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.