STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP14366.1DNA polymerase V. (234 aa)    
Predicted Functional Partners:
SEP00729.1
DNA polymerase V.
 
     0.976
SEP13164.1
DNA polymerase V.
 
     0.976
SEN77515.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 0.944
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.835
SEP13188.1
DNA polymerase V.
  
     0.772
SEO81098.1
DNA polymerase V; Belongs to the peptidase S24 family.
  
   0.751
SEP13125.1
SOS response UmuD protein. Serine peptidase. MEROPS family S24; Belongs to the peptidase S24 family.
  
   0.737
SEP00752.1
DNA polymerase V; Belongs to the peptidase S24 family.
  
   0.734
SEP05606.1
SOS response UmuD protein. Serine peptidase. MEROPS family S24; Belongs to the peptidase S24 family.
  
   0.720
SEO62570.1
DNA polymerase III, delta prime subunit.
   
 
 0.708
Your Current Organism:
Nitrosomonas oligotropha
NCBI taxonomy Id: 42354
Other names: N. oligotropha, Nitrosomonas oligotropha Koops et al. 2001, strain Nm 45
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