STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_9X88440MPN domain-containing protein. (315 aa)    
Predicted Functional Partners:
LSAT_3X9100
MPN domain-containing protein.
   
 0.995
LSAT_4X37061
PCI domain-containing protein.
  
 0.995
LSAT_1X17561
PCI domain-containing protein.
   
 0.995
LSAT_8X85240
PCI domain-containing protein.
   
 0.994
LSAT_2X93941
PCI domain-containing protein.
   
 0.994
LSAT_4X39820
PCI domain-containing protein.
    
 0.993
LSAT_9X116181
CSN8_PSD8_EIF3K domain-containing protein.
   
 0.989
LSAT_7X68880
Uncharacterized protein.
   
 0.985
LSAT_8X117161
Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
 0.950
LSAT_6X11281
PCI domain-containing protein.
   
 0.947
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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