STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_6X60701AvrRpt-cleavage domain-containing protein. (146 aa)    
Predicted Functional Partners:
LSAT_9X103760
Uncharacterized protein; Belongs to the disease resistance NB-LRR family.
    
  0.902
LSAT_9X86901
NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.
    
  0.902
LSAT_9X121401
NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.
    
  0.902
LSAT_7X108321
NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.
    
  0.902
LSAT_7X112441
NAC domain-containing protein.
  
    0.530
LSAT_9X16221
Uncharacterized protein.
      
 0.530
LSAT_6X5760
Remorin_C domain-containing protein.
  
 
 
 0.513
LSAT_6X88500
Uncharacterized protein.
  
     0.499
LSAT_4X153121
Uncharacterized protein.
  
     0.492
LSAT_0X18361
Transp_inhibit domain-containing protein.
  
     0.487
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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