LSAT_2X34721 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_2X34721

Uncharacterized protein. (252 aa)

Predicted Functional Partners:

LSAT_9X25981

0.997

LSAT_3X63981

0.994

LSAT_8X83641

0.984

LSAT_4X111120

0.984

LSAT_4X75281

0.526

LSAT_8X132721

0.435

LSAT_6X78060

0.424

LSAT_6X101400

0.422

LSAT_8X119540

0.416

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_2X34721	LSAT_3X63981	A0A2J6JM01	A0A2J6L074	Uncharacterized protein.	Ncstrn_small domain-containing protein.	0.994
LSAT_2X34721	LSAT_4X111120	A0A2J6JM01	A0A2J6M0E1	Uncharacterized protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.984
LSAT_2X34721	LSAT_4X75281	A0A2J6JM01	A0A2J6JU99	Uncharacterized protein.	Pex14_N domain-containing protein.	0.526
LSAT_2X34721	LSAT_6X101400	A0A2J6JM01	A0A2J6JUS4	Uncharacterized protein.	Uncharacterized protein.	0.422
LSAT_2X34721	LSAT_6X78060	A0A2J6JM01	A0A2J6KDL8	Uncharacterized protein.	Uncharacterized protein.	0.424
LSAT_2X34721	LSAT_8X119540	A0A2J6JM01	A0A2J6JJN4	Uncharacterized protein.	SEC7 domain-containing protein.	0.416
LSAT_2X34721	LSAT_8X132721	A0A2J6JM01	A0A2J6KE72	Uncharacterized protein.	Uncharacterized protein.	0.435
LSAT_2X34721	LSAT_8X83641	A0A2J6JM01	A0A2J6L3J8	Uncharacterized protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.984
LSAT_2X34721	LSAT_9X25981	A0A2J6JM01	A0A2J6KLY3	Uncharacterized protein.	Uncharacterized protein.	0.997
LSAT_3X63981	LSAT_2X34721	A0A2J6L074	A0A2J6JM01	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.994
LSAT_3X63981	LSAT_4X111120	A0A2J6L074	A0A2J6M0E1	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.990
LSAT_3X63981	LSAT_8X132721	A0A2J6L074	A0A2J6KE72	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.601
LSAT_3X63981	LSAT_8X83641	A0A2J6L074	A0A2J6L3J8	Ncstrn_small domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.990
LSAT_3X63981	LSAT_9X25981	A0A2J6L074	A0A2J6KLY3	Ncstrn_small domain-containing protein.	Uncharacterized protein.	0.994
LSAT_4X111120	LSAT_2X34721	A0A2J6M0E1	A0A2J6JM01	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.984
LSAT_4X111120	LSAT_3X63981	A0A2J6M0E1	A0A2J6L074	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Ncstrn_small domain-containing protein.	0.990
LSAT_4X111120	LSAT_8X132721	A0A2J6M0E1	A0A2J6KE72	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.509
LSAT_4X111120	LSAT_9X25981	A0A2J6M0E1	A0A2J6KLY3	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Uncharacterized protein.	0.983
LSAT_4X75281	LSAT_2X34721	A0A2J6JU99	A0A2J6JM01	Pex14_N domain-containing protein.	Uncharacterized protein.	0.526
LSAT_4X75281	LSAT_6X101400	A0A2J6JU99	A0A2J6JUS4	Pex14_N domain-containing protein.	Uncharacterized protein.	0.509