STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_7X21760Uncharacterized protein. (249 aa)    
Predicted Functional Partners:
LSAT_2X132020
Uncharacterized protein.
   
  
 0.632
LSAT_8X8621
Uncharacterized protein.
   
  
 0.632
LSAT_1X33480
Uncharacterized protein.
  
  
 0.568
LSAT_6X41680
AP2/ERF domain-containing protein.
      
 0.481
LSAT_8X25740
Uncharacterized protein.
   
  
 0.475
LSAT_9X6420
Uncharacterized protein.
   
  
 0.475
LSAT_8X56641
Uncharacterized protein.
   
  
 0.475
LSAT_6X40440
Poly [ADP-ribose] polymerase.
   
  
 0.469
LSAT_4X168300
Reticulon-like protein.
   
  
 0.464
LSAT_8X26460
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.
   
  
 0.451
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.