STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_5X145741Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (348 aa)    
Predicted Functional Partners:
LSAT_5X4380
Ribosomal_L2_C domain-containing protein.
   
 
 0.526
LSAT_1X53901
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.507
LSAT_2X102901
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
 
 0.500
LSAT_8X22940
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
   
 
 0.500
LSAT_3X28360
Uncharacterized protein.
   
   0.499
LSAT_8X159361
Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.
      
 0.465
LSAT_2X130120
Uncharacterized protein.
      
 0.465
LSAT_4X170881
Uncharacterized protein.
   
   0.462
LSAT_4X110620
Uncharacterized protein.
   
   0.462
LSAT_4X48420
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
   0.460
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.