LSAT_1X94860 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_1X94860

Uncharacterized protein. (85 aa)

Predicted Functional Partners:

LSAT_0X21060

0.579

LSAT_7X106680

0.559

LSAT_7X47460

0.544

LSAT_8X36821

0.540

LSAT_2X33981

0.540

LSAT_2X36800

0.540

LSAT_5X89101

0.540

LSAT_4X174081

0.540

LSAT_1X11801

0.514

LSAT_6X65640

0.514

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_0X21060	LSAT_1X11801	A0A2J6MK38	A0A2J6L476	C2 NT-type domain-containing protein.	Uncharacterized protein.	0.469
LSAT_0X21060	LSAT_1X94860	A0A2J6MK38	A0A2J6JT95	C2 NT-type domain-containing protein.	Uncharacterized protein.	0.579
LSAT_0X21060	LSAT_6X65640	A0A2J6MK38	A0A2J6L4T2	C2 NT-type domain-containing protein.	Uncharacterized protein.	0.426
LSAT_0X21060	LSAT_7X106680	A0A2J6MK38	A0A2J6MI81	C2 NT-type domain-containing protein.	USP7_ICP0_bdg domain-containing protein.	0.538
LSAT_0X21060	LSAT_7X47460	A0A2J6MK38	A0A2J6KJM6	C2 NT-type domain-containing protein.	Uncharacterized protein.	0.494
LSAT_1X11801	LSAT_0X21060	A0A2J6L476	A0A2J6MK38	Uncharacterized protein.	C2 NT-type domain-containing protein.	0.469
LSAT_1X11801	LSAT_1X94860	A0A2J6L476	A0A2J6JT95	Uncharacterized protein.	Uncharacterized protein.	0.514
LSAT_1X11801	LSAT_6X65640	A0A2J6L476	A0A2J6L4T2	Uncharacterized protein.	Uncharacterized protein.	0.546
LSAT_1X11801	LSAT_7X106680	A0A2J6L476	A0A2J6MI81	Uncharacterized protein.	USP7_ICP0_bdg domain-containing protein.	0.466
LSAT_1X11801	LSAT_7X47460	A0A2J6L476	A0A2J6KJM6	Uncharacterized protein.	Uncharacterized protein.	0.522
LSAT_1X94860	LSAT_0X21060	A0A2J6JT95	A0A2J6MK38	Uncharacterized protein.	C2 NT-type domain-containing protein.	0.579
LSAT_1X94860	LSAT_1X11801	A0A2J6JT95	A0A2J6L476	Uncharacterized protein.	Uncharacterized protein.	0.514
LSAT_1X94860	LSAT_2X33981	A0A2J6JT95	A0A2J6JQN8	Uncharacterized protein.	RPOL_N domain-containing protein.	0.540
LSAT_1X94860	LSAT_2X36800	A0A2J6JT95	A0A2J6K5F7	Uncharacterized protein.	Uncharacterized protein.	0.540
LSAT_1X94860	LSAT_4X174081	A0A2J6JT95	A0A2J6KSK9	Uncharacterized protein.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.540
LSAT_1X94860	LSAT_5X89101	A0A2J6JT95	A0A2J6KN16	Uncharacterized protein.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.540
LSAT_1X94860	LSAT_6X65640	A0A2J6JT95	A0A2J6L4T2	Uncharacterized protein.	Uncharacterized protein.	0.514
LSAT_1X94860	LSAT_7X106680	A0A2J6JT95	A0A2J6MI81	Uncharacterized protein.	USP7_ICP0_bdg domain-containing protein.	0.559
LSAT_1X94860	LSAT_7X47460	A0A2J6JT95	A0A2J6KJM6	Uncharacterized protein.	Uncharacterized protein.	0.544
LSAT_1X94860	LSAT_8X36821	A0A2J6JT95	A0A2J6JIV4	Uncharacterized protein.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.540