STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_8X161460Metalloenzyme domain-containing protein. (85 aa)    
Predicted Functional Partners:
LSAT_4X29061
Uncharacterized protein.
    
 0.994
LSAT_7X29481
Uncharacterized protein.
    
 0.994
LSAT_5X91481
Fip1 domain-containing protein.
   
 0.932
LSAT_5X23620
WD_REPEATS_REGION domain-containing protein.
    
 0.904
LSAT_4X176840
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
    
 0.857
LSAT_2X21361
Uncharacterized protein.
    
 0.783
LSAT_6X27120
CID domain-containing protein.
    
 0.783
LSAT_7X17321
CID domain-containing protein.
    
 0.783
LSAT_2X106801
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
  
 
 0.773
LSAT_9X34640
Uncharacterized protein.
    
 0.755
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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