STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_5X157981Uncharacterized protein. (902 aa)    
Predicted Functional Partners:
LSAT_3X2761
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
   
 0.919
LSAT_4X31580
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
   
 0.919
LSAT_9X119700
Smg4_UPF3 domain-containing protein.
  
 0.909
LSAT_2X36520
Uncharacterized protein.
  
  
 
0.905
LSAT_7X76760
Smg4_UPF3 domain-containing protein.
   
 0.882
LSAT_3X43181
Uncharacterized protein.
    
 0.876
LSAT_6X89421
Helicase ATP-binding domain-containing protein.
    
 0.876
LSAT_6X68181
Helicase ATP-binding domain-containing protein.
    
 0.876
LSAT_6X25861
RRM domain-containing protein.
    
 0.802
LSAT_1X49181
RRM domain-containing protein.
    
 0.802
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.