STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_7X74521PCRF domain-containing protein. (487 aa)    
Predicted Functional Partners:
LSAT_5X142921
Uncharacterized protein.
  
 
 0.915
LSAT_7X91160
Uncharacterized protein.
   
 
 0.912
LSAT_5X90640
Uncharacterized protein.
  
 
 0.905
LSAT_4X117720
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.904
LSAT_7X116060
Uncharacterized protein.
  
 
 0.900
LSAT_3X103240
MTS domain-containing protein.
  
 
 0.900
LSAT_2X63801
MTS domain-containing protein.
  
 
 0.900
LSAT_5X31321
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.866
LSAT_1X48061
Uncharacterized protein.
  
 
 0.864
LSAT_2X93120
Uncharacterized protein.
  
 
 0.864
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.