LSAT_5X149460 protein (Lactuca sativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LSAT_5X149460

Uncharacterized protein. (233 aa)

Predicted Functional Partners:

LSAT_1X74920

0.676

LSAT_7X100320

0.591

LSAT_5X33600

0.554

LSAT_1X77700

0.554

LSAT_8X23940

0.534

LSAT_0X7620

0.534

LSAT_6X49801

0.489

LSAT_1X68000

0.489

LSAT_4X11801

0.489

LSAT_8X36700

0.480

Your Current Organism:

Lactuca sativa

NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSAT_0X7620	LSAT_1X74920	A0A2J6MJL2	A0A2J6K661	Protein YIPF.	Sep15_SelM domain-containing protein.	0.545
LSAT_0X7620	LSAT_5X149460	A0A2J6MJL2	A0A2J6JW70	Protein YIPF.	Uncharacterized protein.	0.534
LSAT_1X68000	LSAT_1X74920	A0A2J6K2A8	A0A2J6K661	Uncharacterized protein.	Sep15_SelM domain-containing protein.	0.480
LSAT_1X68000	LSAT_1X77700	A0A2J6K2A8	A0A2J6M6M1	Uncharacterized protein.	Tr-type G domain-containing protein.	0.429
LSAT_1X68000	LSAT_5X149460	A0A2J6K2A8	A0A2J6JW70	Uncharacterized protein.	Uncharacterized protein.	0.489
LSAT_1X68000	LSAT_5X33600	A0A2J6K2A8	A0A2J6LPW1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.429
LSAT_1X68000	LSAT_7X100320	A0A2J6K2A8	A0A2J6MFA3	Uncharacterized protein.	Peptide-methionine (R)-S-oxide reductase; Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R- enantiomer.	0.547
LSAT_1X74920	LSAT_0X7620	A0A2J6K661	A0A2J6MJL2	Sep15_SelM domain-containing protein.	Protein YIPF.	0.545
LSAT_1X74920	LSAT_1X68000	A0A2J6K661	A0A2J6K2A8	Sep15_SelM domain-containing protein.	Uncharacterized protein.	0.480
LSAT_1X74920	LSAT_1X77700	A0A2J6K661	A0A2J6M6M1	Sep15_SelM domain-containing protein.	Tr-type G domain-containing protein.	0.441
LSAT_1X74920	LSAT_4X11801	A0A2J6K661	A0A2J6L6D7	Sep15_SelM domain-containing protein.	Uncharacterized protein.	0.480
LSAT_1X74920	LSAT_5X149460	A0A2J6K661	A0A2J6JW70	Sep15_SelM domain-containing protein.	Uncharacterized protein.	0.676
LSAT_1X74920	LSAT_5X33600	A0A2J6K661	A0A2J6LPW1	Sep15_SelM domain-containing protein.	Protein kinase domain-containing protein.	0.441
LSAT_1X74920	LSAT_6X49801	A0A2J6K661	A0A2J6JXG8	Sep15_SelM domain-containing protein.	Uncharacterized protein.	0.480
LSAT_1X74920	LSAT_7X100320	A0A2J6K661	A0A2J6MFA3	Sep15_SelM domain-containing protein.	Peptide-methionine (R)-S-oxide reductase; Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R- enantiomer.	0.584
LSAT_1X74920	LSAT_8X23940	A0A2J6K661	A0A2J6M3E1	Sep15_SelM domain-containing protein.	Protein YIPF.	0.545
LSAT_1X77700	LSAT_1X68000	A0A2J6M6M1	A0A2J6K2A8	Tr-type G domain-containing protein.	Uncharacterized protein.	0.429
LSAT_1X77700	LSAT_1X74920	A0A2J6M6M1	A0A2J6K661	Tr-type G domain-containing protein.	Sep15_SelM domain-containing protein.	0.441
LSAT_1X77700	LSAT_4X11801	A0A2J6M6M1	A0A2J6L6D7	Tr-type G domain-containing protein.	Uncharacterized protein.	0.429
LSAT_1X77700	LSAT_5X149460	A0A2J6M6M1	A0A2J6JW70	Tr-type G domain-containing protein.	Uncharacterized protein.	0.554