STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_2X60941Pectate_lyase_3 domain-containing protein. (465 aa)    
Predicted Functional Partners:
LSAT_4X6361
Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.
      
 0.712
GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
      
 0.536
LSAT_8X43541
TF-B3 domain-containing protein.
  
     0.490
LSAT_8X121961
Protein kinase domain-containing protein.
      
 0.483
LSAT_7X58561
FAD-binding PCMH-type domain-containing protein.
      
 0.483
LSAT_3X46621
Uncharacterized protein.
  
     0.483
LSAT_3X137040
Protein kinase domain-containing protein.
      
 0.483
LSAT_2X128021
AP2/ERF domain-containing protein.
      
 0.482
LSAT_7X92461
Pectinesterase.
      
 0.477
LSAT_1X14160
Uncharacterized protein.
  
     0.470
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.