STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_2X40320Smr domain-containing protein. (363 aa)    
Predicted Functional Partners:
LSAT_8X8281
Uncharacterized protein.
   
   0.806
LSAT_5X36641
Uncharacterized protein.
   
   0.781
LSAT_1X116501
Uncharacterized protein.
   
   0.630
LSAT_8X133721
Uncharacterized protein.
   
   0.628
LSAT_9X47480
zf-CHCC domain-containing protein.
   
   0.624
LSAT_3X105561
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
   0.608
LSAT_1X32740
L51_S25_CI-B8 domain-containing protein.
   
   0.608
LSAT_3X44180
Uncharacterized protein; Belongs to the complex I LYR family.
    
   0.592
LSAT_7X95720
Uncharacterized protein.
    
   0.592
LSAT_8X144301
Uncharacterized protein.
    
   0.581
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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