STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_4X125921Slu7 domain-containing protein. (500 aa)    
Predicted Functional Partners:
LSAT_4X71761
Uncharacterized protein.
   
 0.974
LSAT_5X187781
SFM domain-containing protein.
  
 0.968
LSAT_3X32561
Uncharacterized protein.
   
 0.950
LSAT_4X74560
Cwf21 domain-containing protein.
    
 0.947
LSAT_6X11921
Uncharacterized protein.
   
 
 0.936
LSAT_7X1281
Ubiquitin-like domain-containing protein.
   
 0.926
LSAT_4X65161
Cir_N domain-containing protein.
   
 0.921
LSAT_1X34320
Uncharacterized protein.
    
 
 0.919
LSAT_9X111221
Uncharacterized protein.
   
 0.915
LSAT_7X82301
Uncharacterized protein.
   
 0.905
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.