STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_3X110340Sod_Fe_N domain-containing protein. (190 aa)    
Predicted Functional Partners:
LSAT_9X20000
Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.785
LSAT_6X7781
Uncharacterized protein.
   
 
 0.755
LSAT_5X17000
Uncharacterized protein.
   
   0.739
LSAT_7X2701
Uncharacterized protein.
   
 
 0.719
LSAT_3X23200
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.716
LSAT_5X142921
Uncharacterized protein.
   
 
 0.689
LSAT_5X90640
Uncharacterized protein.
   
 
 0.687
LSAT_3X37780
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
  0.679
LSAT_9X15461
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
  0.679
LSAT_9X15021
Uncharacterized protein.
  
 
 0.677
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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