STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_8X167321WD_REPEATS_REGION domain-containing protein. (1239 aa)    
Predicted Functional Partners:
LSAT_8X99960
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
 
 0.963
LSAT_5X189761
WD_REPEATS_REGION domain-containing protein.
   
    0.876
LSAT_7X16440
FtsJ domain-containing protein.
   
 
 0.828
LSAT_6X52080
Uncharacterized protein.
   
 
 0.828
LSAT_2X118400
FtsJ domain-containing protein.
   
 
 0.828
LSAT_5X119261
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 
 0.828
LSAT_3X100801
DUF2428 domain-containing protein.
  
 
 0.734
LSAT_9X117961
UPF0020 domain-containing protein.
   
 
 0.726
LSAT_1X27101
WD_REPEATS_REGION domain-containing protein.
   
    0.702
LSAT_1X5280
Uncharacterized protein.
   
    0.687
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
Server load: low (16%) [HD]