STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_4X106021Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (139 aa)    
Predicted Functional Partners:
LSAT_1X24001
NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
  
 
 0.966
LSAT_5X31321
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.964
LSAT_5X142921
Uncharacterized protein.
   
 
 0.963
LSAT_7X91160
Uncharacterized protein.
  
 0.960
LSAT_3X113300
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uL22 family.
  
 0.960
LSAT_5X90640
Uncharacterized protein.
   
 
 0.958
LSAT_9X15021
Uncharacterized protein.
  
 
 0.956
LSAT_7X3801
Uncharacterized protein.
  
 0.952
LSAT_1X116300
Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.
 
 
 0.950
LSAT_4X42200
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
 
 0.948
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
Server load: low (26%) [HD]