STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_4X164861Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (187 aa)    
Predicted Functional Partners:
LSAT_5X185281
Uncharacterized protein.
   
 0.886
LSAT_8X93900
Uncharacterized protein.
   
 0.886
LSAT_6X38881
Uncharacterized protein.
   
 0.886
LSAT_1X101701
WD_REPEATS_REGION domain-containing protein.
   
 0.883
LSAT_4X32040
WD_REPEATS_REGION domain-containing protein.
   
 0.883
LSAT_8X87660
Uncharacterized protein.
   
 0.868
LSAT_5X142520
Uncharacterized protein.
   
 0.868
LSAT_2X134061
PAP_central domain-containing protein.
   
 0.868
LSAT_7X37081
Uncharacterized protein.
   
 0.868
LSAT_3X9061
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 0.836
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
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