STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSAT_3X3420Uncharacterized protein. (195 aa)    
Predicted Functional Partners:
LSAT_8X99481
Josephin domain-containing protein.
    
 0.712
LSAT_9X103601
Deacetylase sirtuin-type domain-containing protein.
    
 0.693
LSAT_5X1860
Deacetylase sirtuin-type domain-containing protein.
    
 0.693
LSAT_7X106341
NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.
    
 0.693
LSAT_0X3661
PHD domain-containing protein.
    
 0.629
LSAT_6X48640
Uncharacterized protein.
   
 0.606
LSAT_2X66121
Uncharacterized protein.
   
 0.606
LSAT_1X16160
Histone H3; Belongs to the histone H3 family.
   
 0.606
LSAT_4X80120
Uncharacterized protein.
   
 0.606
LSAT_1X3221
Histone domain-containing protein.
   
 0.606
Your Current Organism:
Lactuca sativa
NCBI taxonomy Id: 4236
Other names: L. sativa, Lactuca sativa L., cultivated lettuce, garden lettuce
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.